Exome sequencing data analysis for diagnosing a autism genes

From vcf files of 23andme or sequencing We need to study about 100 genes using galaxyproject, snpeff, annotate, bcftools, gatk, GEMINI databases etc. and check this genes: MTHFR,CHD8,SCN2A,SYNGAP1,ADNP,FOXP1,POGZ,ARID1B,SUV420H1,DYRK1A,SLC6A1,GRIN2B,PTEN,SHANK3,MED13L,GIGYF1,CHD2,ANKRD11,ANK2,ASH1L,TLK2,DNMT3A,DEAF1,CTNNB1,KDM6B,DSCAM,SETD5,KCNQ3,SRPR,KDM5B,WAC,SHANK2,NRXN1,TBL1XR1,MYT1L,BCL11A,RORB,RAI1,DYNC1H1,DPYSL2,AP2S1,KMT2C,PAX5,MKX,GABRB3,SIN3A,MBD5,MAP1A,STXBP1,CELF4,PHF12,TBR1,PPP2R5D,TM9SF4,PHF21A,PRR12,SKI,ASXL3,SPAST,SMARCC2,TRIP12,CREBBP,TCF4,CACNA1E,GNAI1,TCF20,FOXP2,NSD1,TCF7L2,LDB1,EIF3G,PHF2,KIAA0232,VEZF1,GFAP,IRF2BPL,ZMYND8,SATB1,RFX3,SCN1A,PPP5C,TRIM23,TRAF7,ELAVL3,GRIA2,LRRC4C,CACNA2D3,NUP155,KMT2E,NR3C2,NACC1,PTK7,PPP1R9B,GABRB2,HDLBP,TAOK1,UBR1,TEK,KCNMA1,CORO1A,HECTD4,NCOA1,DIP2A